Analysis of genes having pattern m_tricarboxylic-acid_pathway_orfnum2SD_n3 in their upstream region

There is about 140 genes out of 6312 (2.22 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
 Testwise p-value
0.01
2.101e-05
0.05
0.000105

Experiment
 p=0.0250
 p=0.0500

#Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
 #Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
aep2
271
19
3.161
0.06949
0.0008122
409
24
2.646
0.0659
0.001165
cbp2
13
5
17.34
0.1119
0.0001804
26
7
12.14
0.1081
4.917e-05
cem1
89
11
5.572
0.08269
0.0002674
134
14
4.71
0.0827
0.0001156
cin5
5
3
27.05
0.1105
0.001728
11
3
12.3
0.0712
0.035
cyt1
33
5
6.831
0.06388
0.03161
62
7
5.09
0.06165
0.02486
gpa2
35
5
6.441
0.06141
0.04311
54
7
5.844
0.06804
0.009667
imp2
33
10
13.66
0.1384
9.441e-08
62
12
8.726
0.1162
5.757e-07
mrpl33
32
6
8.454
0.08033
0.002669
50
7
6.312
0.07174
0.005642
msu1
188
13
3.118
0.05637
0.02518
323
16
2.233
0.04378
0.2478
pet111
22
6
12.3
0.1008
0.0002373
43
8
8.388
0.09238
0.0001973
rip1
21
5
10.73
0.08487
0.002694
31
5
7.272
0.06656
0.0229
she4
942
33
1.579
0.03754
0.6675
1172
44
1.693
0.05079
0.02527
vma8
205
15
3.299
0.06394
0.004438
282
16
2.558
0.05134
0.05474
yer050c
748
32
1.929
0.05215
0.02441
995
40
1.812
0.05386
0.0124
ymr293c
348
23
2.98
0.07264
0.0002382
495
29
2.641
0.0728
0.0001243