Analysis of genes having pattern m_regulation_of_amino-acid_metabolism_orfnum2SD_n7 in their upstream region

There is about 55 genes out of 6312 (0.87 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

cbp2
13
2
17.66
0.07097
0.06748
26
3
13.24
0.07386
0.02682

ymr031w-a
273
9
3.783
0.05562
0.03602
389
13
3.835
0.06827
0.001439

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
cbp2	13	2	17.66	0.07097	0.06748	26	3	13.24	0.07386	0.02682
ymr031w-a	273	9	3.783	0.05562	0.03602	389	13	3.835	0.06827	0.001439