Analysis of genes having pattern m_regulation_of_amino-acid_metabolism_orfnum2SD_n10 in their upstream region

There is about 199 genes out of 6312 (3.15 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

gpa2
35
6
5.437
0.06015
0.04529
54
6
3.524
0.04278
0.5602

yer030w
5
3
19.03
0.09171
0.007149
8
3
11.89
0.07018
0.04339

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
gpa2	35	6	5.437	0.06015	0.04529	54	6	3.524	0.04278	0.5602
yer030w	5	3	19.03	0.09171	0.007149	8	3	11.89	0.07018	0.04339