Analysis of genes having pattern m_proteolysis_orfnum2SD_n18 in their upstream region

There is about 380 genes out of 6312 (6.02 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

aep2
271
29
1.778
0.04438
0.3708
409
44
1.787
0.05561
0.02575

pet127
4
4
16.61
0.09967
0.001748
4
4
16.61
0.09967
0.001742

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
aep2	271	29	1.778	0.04438	0.3708	409	44	1.787	0.05561	0.02575
pet127	4	4	16.61	0.09967	0.001748	4	4	16.61	0.09967	0.001742