Analysis of genes having pattern m_phosphate_transport_orfnum2SD_n8 in their upstream region

There is about 524 genes out of 6312 (8.30 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

rml2 (**13)
538
69
1.545
0.05588
0.04408
753
92
1.472
0.05891
0.02115

FKS1 (tet promoter)
146
23
1.898
0.04478
0.4659
224
38
2.043
0.06406
0.005217

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
rml2 (**13)	538	69	1.545	0.05588	0.04408	753	92	1.472	0.05891	0.02115
FKS1 (tet promoter)	146	23	1.898	0.04478	0.4659	224	38	2.043	0.06406	0.005217