Analysis of genes having pattern m_phosphate_transport_orfnum2SD_n18 in their upstream region

There is about 728 genes out of 6312 (11.53 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

pet127
4
4
8.67
0.07021
0.0376
4
4
8.67
0.07021
0.03748

rts1
144
34
2.047
0.06276
0.01414
213
42
1.71
0.05406
0.1175

vac8
121
24
1.72
0.04109
1.322
199
44
1.917
0.06559
0.00695

ymr293c
348
63
1.57
0.05748
0.06478
495
86
1.506
0.06244
0.02242

KAR2 (tet promoter)
768
119
1.343
0.0573
0.1201
1064
172
1.402
0.07741
0.0003945

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
pet127	4	4	8.67	0.07021	0.0376	4	4	8.67	0.07021	0.03748
rts1	144	34	2.047	0.06276	0.01414	213	42	1.71	0.05406	0.1175
vac8	121	24	1.72	0.04109	1.322	199	44	1.917	0.06559	0.00695
ymr293c	348	63	1.57	0.05748	0.06478	495	86	1.506	0.06244	0.02242
KAR2 (tet promoter)	768	119	1.343	0.0573	0.1201	1064	172	1.402	0.07741	0.0003945