Analysis of genes having pattern m_other_energy_generation_activities_orfnum2SD_n12 in their upstream region

There is about 267 genes out of 6312 (4.23 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

pep12
76
10
3.111
0.04982
0.1482
97
13
3.168
0.05788
0.02697

rad57
91
11
2.858
0.04815
0.1864
155
17
2.593
0.05431
0.04253

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
pep12	76	10	3.111	0.04982	0.1482	97	13	3.168	0.05788	0.02697
rad57	91	11	2.858	0.04815	0.1864	155	17	2.593	0.05431	0.04253