Analysis of genes having pattern m_metal_ion_transporters_orfnum2SD_n6 in their upstream region

There is about 390 genes out of 6312 (6.18 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

cup5
267
29
1.758
0.04366
0.4363
395
43
1.762
0.05379
0.04277

yer050c
748
72
1.558
0.05673
0.01818
995
87
1.415
0.05088
0.08785

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
cup5	267	29	1.758	0.04366	0.4363	395	43	1.762	0.05379	0.04277
yer050c	748	72	1.558	0.05673	0.01818	995	87	1.415	0.05088	0.08785