Analysis of genes having pattern m_metal_ion_transporters_orfnum2SD_n10 in their upstream region

There is about 267 genes out of 6312 (4.23 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

mrpl33
32
8
5.91
0.07418
0.00368
50
8
3.782
0.05294
0.1039

she4
942
62
1.556
0.05153
0.0398
1172
73
1.472
0.05021
0.05323

vma8
205
21
2.422
0.05611
0.02413
282
28
2.347
0.06279
0.003722

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
mrpl33	32	8	5.91	0.07418	0.00368	50	8	3.782	0.05294	0.1039
she4	942	62	1.556	0.05153	0.0398	1172	73	1.472	0.05021	0.05323
vma8	205	21	2.422	0.05611	0.02413	282	28	2.347	0.06279	0.003722