Analysis of genes having pattern m_metabolism_of_energy_reserves_orfnum2SD_n8 in their upstream region

There is about 298 genes out of 6312 (4.72 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

ckb2
178
16
1.904
0.03584
1.471
257
27
2.225
0.05797
0.01369

kim4
119
17
3.026
0.06373
0.006159
199
26
2.767
0.07252
0.0004018

rps24a (**9)
267
21
1.666
0.03306
2.401
420
38
1.916
0.05668
0.01477

sir4
126
17
2.858
0.06028
0.0128
189
22
2.466
0.05885
0.01336

vac8
121
20
3.501
0.07903
0.0001495
199
24
2.555
0.064
0.003686

yer050c
748
57
1.614
0.05294
0.03245
995
69
1.469
0.04832
0.1016

ymr293c
348
32
1.948
0.05302
0.03996
495
40
1.712
0.04863
0.1036

yor080w (**3)
335
34
2.15
0.06257
0.003565
507
47
1.964
0.06573
0.001068

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
ckb2	178	16	1.904	0.03584	1.471	257	27	2.225	0.05797	0.01369
kim4	119	17	3.026	0.06373	0.006159	199	26	2.767	0.07252	0.0004018
rps24a (**9)	267	21	1.666	0.03306	2.401	420	38	1.916	0.05668	0.01477
sir4	126	17	2.858	0.06028	0.0128	189	22	2.466	0.05885	0.01336
vac8	121	20	3.501	0.07903	0.0001495	199	24	2.555	0.064	0.003686
yer050c	748	57	1.614	0.05294	0.03245	995	69	1.469	0.04832	0.1016
ymr293c	348	32	1.948	0.05302	0.03996	495	40	1.712	0.04863	0.1036
yor080w (**3)	335	34	2.15	0.06257	0.003565	507	47	1.964	0.06573	0.001068