Analysis of genes having pattern m_lysosomal_and_vacuolar_degradation_orfnum2SD_n3 in their upstream region

There is about 174 genes out of 6312 (2.76 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

gas1
248
17
2.487
0.0514
0.06104
335
22
2.382
0.05598
0.01771

vps8
62
9
5.266
0.07193
0.003384
95
10
3.819
0.05916
0.0246

yhr039c
3
2
24.18
0.08518
0.02798
5
2
14.51
0.06415
0.1229

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
gas1	248	17	2.487	0.0514	0.06104	335	22	2.382	0.05598	0.01771
vps8	62	9	5.266	0.07193	0.003384	95	10	3.819	0.05916	0.0246
yhr039c	3	2	24.18	0.08518	0.02798	5	2	14.51	0.06415	0.1229