Analysis of genes having pattern m_ion_transporters_orfnum2SD_n6 in their upstream region

There is about 111 genes out of 6312 (1.76 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

cka2
146
12
4.674
0.07593
0.0006329
238
19
4.54
0.09409
2.132e-06

cup5
267
15
3.195
0.0621
0.00596
395
17
2.447
0.05051
0.05792

gas1
248
13
2.981
0.05398
0.03797
335
14
2.376
0.04405
0.2439

mrpl33
32
5
8.885
0.07545
0.007756
50
5
5.686
0.05621
0.08528

rip1
21
4
10.83
0.07611
0.01235
31
4
7.337
0.05971
0.07394

vma8
205
12
3.329
0.05744
0.02168
282
13
2.621
0.04733
0.137

yor072w
3
2
37.91
0.1077
0.00731
5
2
22.75
0.08197
0.03258

HMG2 (tet promoter)
555
25
2.561
0.06537
0.001001
736
33
2.55
0.07585
2.465e-05

KAR2 (tet promoter)
768
24
1.777
0.03933
0.4841
1064
34
1.817
0.04988
0.03401

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
cka2	146	12	4.674	0.07593	0.0006329	238	19	4.54	0.09409	2.132e-06
cup5	267	15	3.195	0.0621	0.00596	395	17	2.447	0.05051	0.05792
gas1	248	13	2.981	0.05398	0.03797	335	14	2.376	0.04405	0.2439
mrpl33	32	5	8.885	0.07545	0.007756	50	5	5.686	0.05621	0.08528
rip1	21	4	10.83	0.07611	0.01235	31	4	7.337	0.05971	0.07394
vma8	205	12	3.329	0.05744	0.02168	282	13	2.621	0.04733	0.137
yor072w	3	2	37.91	0.1077	0.00731	5	2	22.75	0.08197	0.03258
HMG2 (tet promoter)	555	25	2.561	0.06537	0.001001	736	33	2.55	0.07585	2.465e-05
KAR2 (tet promoter)	768	24	1.777	0.03933	0.4841	1064	34	1.817	0.04988	0.03401