Analysis of genes having pattern m_ion_transporters_orfnum2SD_n11 in their upstream region

There is about 250 genes out of 6312 (3.96 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

aep2
271
24
2.236
0.05457
0.02894
409
27
1.667
0.03739
1.023

cup5
267
24
2.269
0.05557
0.02302
395
30
1.918
0.04982
0.07483

mac1
64
8
3.156
0.04503
0.3462
82
11
3.387
0.05641
0.04047

msu1
188
20
2.686
0.06116
0.007775
323
27
2.111
0.0539
0.03098

rml2 (**13)
538
37
1.736
0.04757
0.115
753
51
1.71
0.0552
0.0148

yhr034c
39
5
3.237
0.03638
1.407
81
11
3.429
0.05702
0.03627

ymr293c
348
32
2.322
0.06636
0.001155
495
41
2.091
0.06641
0.0008023

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
aep2	271	24	2.236	0.05457	0.02894	409	27	1.667	0.03739	1.023
cup5	267	24	2.269	0.05557	0.02302	395	30	1.918	0.04982	0.07483
mac1	64	8	3.156	0.04503	0.3462	82	11	3.387	0.05641	0.04047
msu1	188	20	2.686	0.06116	0.007775	323	27	2.111	0.0539	0.03098
rml2 (**13)	538	37	1.736	0.04757	0.115	753	51	1.71	0.0552	0.0148
yhr034c	39	5	3.237	0.03638	1.407	81	11	3.429	0.05702	0.03627
ymr293c	348	32	2.322	0.06636	0.001155	495	41	2.091	0.06641	0.0008023