Analysis of genes having pattern m_homeostasis_of_other_ions_orfnum2SD_n30 in their upstream region

There is about 187 genes out of 6312 (2.96 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

rts1
144
14
3.282
0.06158
0.009808
213
17
2.694
0.05612
0.02354

ERG11 (tet promoter)
1641
73
1.502
0.0536
0.01104
1980
89
1.517
0.06267
0.0004187

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
rts1	144	14	3.282	0.06158	0.009808	213	17	2.694	0.05612	0.02354
ERG11 (tet promoter)	1641	73	1.502	0.0536	0.01104	1980	89	1.517	0.06267	0.0004187