Analysis of genes having pattern m_glyoxylate_cycle_orfnum2SD_n11 in their upstream region

There is about 688 genes out of 6312 (10.90 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

cka2
146
33
2.074
0.06242
0.01373
238
43
1.658
0.05156
0.1846

kim4
119
27
2.082
0.05666
0.05285
199
45
2.075
0.07313
0.0007731

pet127
4
4
9.174
0.07242
0.02874
4
4
9.174
0.07242
0.02865

sir4
126
29
2.112
0.0598
0.02581
189
40
1.942
0.06314
0.01138

ymr293c
348
58
1.529
0.05194
0.1987
495
82
1.52
0.06141
0.02339

yor080w (**3)
335
53
1.451
0.04459
0.9198
507
84
1.52
0.06221
0.01916

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
cka2	146	33	2.074	0.06242	0.01373	238	43	1.658	0.05156	0.1846
kim4	119	27	2.082	0.05666	0.05285	199	45	2.075	0.07313	0.0007731
pet127	4	4	9.174	0.07242	0.02874	4	4	9.174	0.07242	0.02865
sir4	126	29	2.112	0.0598	0.02581	189	40	1.942	0.06314	0.01138
ymr293c	348	58	1.529	0.05194	0.1987	495	82	1.52	0.06141	0.02339
yor080w (**3)	335	53	1.451	0.04459	0.9198	507	84	1.52	0.06221	0.01916