Analysis of genes having pattern m_glycolysis_and_gluconeogenesis_orfnum2SD_n27 in their upstream region

There is about 97 genes out of 6312 (1.54 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

"dig1, dig2"
437
15
2.234
0.04244
0.3191
580
21
2.356
0.05432
0.01853

erg6
7
2
18.59
0.07328
0.05952
15
3
13.01
0.07334
0.02983

ERG11 (tet promoter)
1641
38
1.507
0.03815
0.4836
1980
47
1.545
0.04658
0.04872

KAR2 (tet promoter)
768
29
2.457
0.06819
0.0002755
1064
30
1.835
0.04749
0.06324

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
"dig1, dig2"	437	15	2.234	0.04244	0.3191	580	21	2.356	0.05432	0.01853
erg6	7	2	18.59	0.07328	0.05952	15	3	13.01	0.07334	0.02983
ERG11 (tet promoter)	1641	38	1.507	0.03815	0.4836	1980	47	1.545	0.04658	0.04872
KAR2 (tet promoter)	768	29	2.457	0.06819	0.0002755	1064	30	1.835	0.04749	0.06324