Analysis of genes having pattern m_cell_death_orfnum2SD_n22 in their upstream region

There is about 612 genes out of 6312 (9.70 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

"bub3 (**2,8,13)"
100
23
2.372
0.06028
0.02084
154
31
2.076
0.0598
0.02104

vac8
121
24
2.046
0.05153
0.1379
199
37
1.918
0.05884
0.02594

yer030w
5
4
8.251
0.06739
0.04716
8
4
5.157
0.04931
0.3841

HMG2 (tet promoter)
555
73
1.357
0.04393
1.076
736
103
1.443
0.06112
0.01987

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
"bub3 (**2,8,13)"	100	23	2.372	0.06028	0.02084	154	31	2.076	0.0598	0.02104
vac8	121	24	2.046	0.05153	0.1379	199	37	1.918	0.05884	0.02594
yer030w	5	4	8.251	0.06739	0.04716	8	4	5.157	0.04931	0.3841
HMG2 (tet promoter)	555	73	1.357	0.04393	1.076	736	103	1.443	0.06112	0.01987