Analysis of genes having pattern m_c-compound_and_carbohydrate_utilization_orfnum2SD_n9 in their upstream region

There is about 145 genes out of 6312 (2.30 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

cyt1
33
5
6.596
0.06242
0.04086
62
7
4.915
0.06009
0.03384

kim4
119
10
3.658
0.05692
0.03442
199
14
3.062
0.05759
0.01953

vac8
121
10
3.598
0.05611
0.03965
199
12
2.625
0.0455
0.2305

yel033w
348
19
2.377
0.05168
0.04761
512
21
1.785
0.03662
1.002

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
cyt1	33	5	6.596	0.06242	0.04086	62	7	4.915	0.06009	0.03384
kim4	119	10	3.658	0.05692	0.03442	199	14	3.062	0.05759	0.01953
vac8	121	10	3.598	0.05611	0.03965	199	12	2.625	0.0455	0.2305
yel033w	348	19	2.377	0.05168	0.04761	512	21	1.785	0.03662	1.002