Analysis of genes having pattern m_anion_transporters_orfnum2SD_n4 in their upstream region

There is about 375 genes out of 6312 (5.94 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
 Testwise p-value
0.01
2.101e-05
0.05
0.000105

Experiment
 p=0.0250
 p=0.0500

#Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
 #Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
aep2
271
29
1.801
0.04529
0.2891
409
45
1.852
0.05945
0.009163
cem1
89
16
3.026
0.06238
0.01059
134
20
2.512
0.05781
0.0224
cka2
146
16
1.845
0.03466
2.064
238
29
2.051
0.05472
0.03603
erg6
7
3
7.214
0.05241
0.2706
15
6
6.733
0.07087
0.01251
kim4
119
20
2.829
0.06543
0.004184
199
29
2.453
0.06807
0.001387
msu1
188
24
2.149
0.05277
0.06057
323
36
1.876
0.05394
0.04