Analysis of genes having pattern m_anion_transporters_orfnum2SD_n23 in their upstream region

There is about 240 genes out of 6312 (3.80 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

gas1
248
22
2.333
0.05487
0.02812
335
31
2.434
0.06889
0.0005887

hda1
74
10
3.554
0.05602
0.04766
122
14
3.018
0.05723
0.02636

rts1
144
19
3.47
0.07598
0.0002834
213
25
3.087
0.07866
7.274e-05

ubr1
61
4
1.725
0.01493
17.35
107
13
3.195
0.05816
0.02396

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
gas1	248	22	2.333	0.05487	0.02812	335	31	2.434	0.06889	0.0005887
hda1	74	10	3.554	0.05602	0.04766	122	14	3.018	0.05723	0.02636
rts1	144	19	3.47	0.07598	0.0002834	213	25	3.087	0.07866	7.274e-05
ubr1	61	4	1.725	0.01493	17.35	107	13	3.195	0.05816	0.02396