Analysis of genes having pattern m_anion_transporters_orfnum2SD_n20 in their upstream region

There is about 238 genes out of 6312 (3.77 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
 Testwise p-value
0.01
2.101e-05
0.05
0.000105

Experiment
 p=0.0250
 p=0.0500

#Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
 #Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
aep2
271
21
2.055
0.04557
0.2047
409
31
2.01
0.05419
0.02502
gas1
248
22
2.353
0.0554
0.02469
335
27
2.138
0.05474
0.02444
msu1
188
17
2.398
0.04961
0.1023
323
26
2.135
0.05358
0.0327
pep12
76
11
3.839
0.06273
0.01267
97
11
3.008
0.05046
0.1152
she4
942
59
1.661
0.05693
0.007691
1172
69
1.561
0.05534
0.01074
ymr293c
348
30
2.286
0.06293
0.00294
495
36
1.929
0.05532
0.01714