Analysis of genes having pattern m_amino-acid_transporters_orfnum2SD_n11 in their upstream region

There is about 398 genes out of 6312 (6.31 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
 Testwise p-value
0.01
2.101e-05
0.05
0.000105

Experiment
 p=0.0250
 p=0.0500

#Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
 #Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
aep2
271
36
2.107
0.0636
0.003845
409
45
1.745
0.05429
0.03795
"dig1, dig2"
437
48
1.742
0.05601
0.02437
580
59
1.613
0.05458
0.03424
ymr293c
348
40
1.823
0.05475
0.03475
495
51
1.634
0.05172
0.07109
ERG11 (tet promoter)
1641
142
1.372
0.06274
0.002557
1980
161
1.29
0.0566
0.01697