Analysis of genes having pattern m_amino-acid_transport_orfnum2SD_n14 in their upstream region

There is about 389 genes out of 6312 (6.16 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

bul1
35
9
4.172
0.06167
0.02595
61
11
2.926
0.05008
0.1567

mrt4
357
34
1.545
0.03744
1.493
550
55
1.623
0.05306
0.04929

pep12
76
13
2.776
0.05171
0.1066
97
16
2.676
0.05534
0.04639

rml2 (**13)
538
55
1.659
0.05525
0.02806
753
68
1.465
0.04822
0.1645

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
bul1	35	9	4.172	0.06167	0.02595	61	11	2.926	0.05008	0.1567
mrt4	357	34	1.545	0.03744	1.493	550	55	1.623	0.05306	0.04929
pep12	76	13	2.776	0.05171	0.1066	97	16	2.676	0.05534	0.04639
rml2 (**13)	538	55	1.659	0.05525	0.02806	753	68	1.465	0.04822	0.1645