Analysis of genes having pattern m_amino-acid_metabolism_orfnum2SD_n25 in their upstream region

There is about 108 genes out of 6312 (1.71 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

arg80
5
2
23.38
0.08318
0.03061
8
3
21.92
0.09837
0.004033

vps8
62
5
4.713
0.049
0.226
95
8
4.922
0.0642
0.01311

yer050c
748
24
1.875
0.04293
0.2259
995
32
1.88
0.05082
0.02852

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
arg80	5	2	23.38	0.08318	0.03061	8	3	21.92	0.09837	0.004033
vps8	62	5	4.713	0.049	0.226	95	8	4.922	0.0642	0.01311
yer050c	748	24	1.875	0.04293	0.2259	995	32	1.88	0.05082	0.02852