Analysis of genes having pattern m_amino-acid_metabolism_orfnum2SD_n14 in their upstream region

There is about 69 genes out of 6312 (1.09 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

pfd2 (**14)
135
5
3.388
0.03727
1.053
214
9
3.847
0.05625
0.03487

rts1
144
7
4.447
0.05552
0.05615
213
10
4.295
0.0649
0.006251

vps8
62
3
4.426
0.03598
1.371
95
6
5.778
0.06221
0.02678

yer030w
5
2
36.59
0.1054
0.008089
8
2
22.87
0.08194
0.03206

yer050c
748
18
2.201
0.04659
0.09832
995
24
2.207
0.05515
0.008907

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
pfd2 (**14)	135	5	3.388	0.03727	1.053	214	9	3.847	0.05625	0.03487
rts1	144	7	4.447	0.05552	0.05615	213	10	4.295	0.0649	0.006251
vps8	62	3	4.426	0.03598	1.371	95	6	5.778	0.06221	0.02678
yer030w	5	2	36.59	0.1054	0.008089	8	2	22.87	0.08194	0.03206
yer050c	748	18	2.201	0.04659	0.09832	995	24	2.207	0.05515	0.008907