Analysis of genes having pattern m_amino-acid_biosynthesis_orfnum2SD_n9 in their upstream region

There is about 112 genes out of 6312 (1.77 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
 Testwise p-value
0.01
2.101e-05
0.05
0.000105

Experiment
 p=0.0250
 p=0.0500

#Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
 #Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
anp1
384
17
2.495
0.05162
0.04402
541
21
2.188
0.04942
0.05774
arg80
5
2
22.54
0.08158
0.03197
8
3
21.13
0.09647
0.004411
ckb2
178
10
3.166
0.04994
0.09966
257
15
3.289
0.06378
0.004042
clb2
164
15
5.155
0.0915
1.244e-05
243
15
3.479
0.06704
0.002038
gcn4
72
8
6.262
0.07618
0.001942
92
10
6.126
0.08402
0.0002733
gln3
73
7
5.404
0.06425
0.01581
110
10
5.123
0.07407
0.001469
hda1
74
6
4.569
0.05248
0.1086
122
11
5.081
0.07729
0.0006336
imp2' (**12)
29
4
7.773
0.06199
0.05442
66
7
5.977
0.06898
0.007896
pex12
18
3
9.393
0.06044
0.09352
23
5
12.25
0.09157
0.001264
sbh2
9
2
12.52
0.0586
0.1659
14
4
16.1
0.09579
0.001844
sir2
47
7
8.394
0.08624
0.0007117
91
11
6.812
0.09472
3.021e-05
sir4
126
6
2.684
0.0326
1.832
189
13
3.876
0.06826
0.002192
ubr1
61
8
7.391
0.08505
0.000523
107
9
4.74
0.06628
0.00704
vps8
62
9
8.181
0.09632
6.106e-05
95
12
7.119
0.1019
5.586e-06
yel008w
53
8
8.507
0.09302
0.0001675
75
9
6.763
0.08515
0.0003353
yer083c
276
12
2.45
0.04211
0.3462
407
19
2.631
0.05802
0.009407
ymr031w-a
273
15
3.097
0.06032
0.008295
389
16
2.318
0.04589
0.1453
AUR1 (tet promoter)
159
10
3.544
0.0553
0.03939
233
11
2.661
0.04409
0.256