Analysis of genes having pattern m_RPE69 in their upstream region

There is about 92 genes out of 6312 (1.46 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

"bub3 (**2,8,13)"
100
6
4.117
0.04829
0.2176
154
9
4.01
0.05812
0.0281

vac8
121
8
4.536
0.06033
0.02348
199
9
3.103
0.04641
0.2132

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
"bub3 (**2,8,13)"	100	6	4.117	0.04829	0.2176	154	9	4.01	0.05812	0.0281
vac8	121	8	4.536	0.06033	0.02348	199	9	3.103	0.04641	0.2132