Analysis of genes having pattern m_RPE58 in their upstream region

There is about 61 genes out of 6312 (0.97 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

rps24a (**9)
267
7
2.713
0.03573
1.28
420
14
3.449
0.06477
0.002674

vac8
121
7
5.986
0.06897
0.007014
199
8
4.16
0.05646
0.03894

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
rps24a (**9)	267	7	2.713	0.03573	1.28	420	14	3.449	0.06477	0.002674
vac8	121	7	5.986	0.06897	0.007014	199	8	4.16	0.05646	0.03894