Analysis of genes having pattern m_RPE32 in their upstream region

There is about 91 genes out of 6312 (1.44 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

vac8
121
7
4.013
0.05115
0.1215
199
12
4.183
0.0697
0.001889

HMG2 (tet promoter)
555
13
1.625
0.0239
8.25
736
23
2.168
0.05173
0.02901

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
vac8	121	7	4.013	0.05115	0.1215	199	12	4.183	0.0697	0.001889
HMG2 (tet promoter)	555	13	1.625	0.0239	8.25	736	23	2.168	0.05173	0.02901