Analysis of genes having pattern m_MERE11 in their upstream region

There is about 215 genes out of 6312 (3.41 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

she4
942
52
1.621
0.05066
0.04087
1172
59
1.478
0.04488
0.1685

sir4
126
15
3.495
0.06763
0.002735
189
19
2.951
0.06531
0.002956

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
she4	942	52	1.621	0.05066	0.04087	1172	59	1.478	0.04488	0.1685
sir4	126	15	3.495	0.06763	0.002735	189	19	2.951	0.06531	0.002956