Analysis of genes having pattern m_LFTE17 in their upstream region

There is about 483 genes out of 6312 (7.65 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

"isw1, isw2"
151
25
2.164
0.05529
0.04531
211
36
2.23
0.0691
0.001233

KAR2 (tet promoter)
768
88
1.497
0.05922
0.01514
1064
109
1.339
0.05075
0.1603

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
"isw1, isw2"	151	25	2.164	0.05529	0.04531	211	36	2.23	0.0691	0.001233
KAR2 (tet promoter)	768	88	1.497	0.05922	0.01514	1064	109	1.339	0.05075	0.1603