Analysis of genes having pattern Yap1 in their upstream region

There is about 78 genes out of 6312 (1.24 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

cem1
89
6
5.455
0.05974
0.03844
134
6
3.623
0.0434
0.4186

cup5
267
14
4.243
0.07646
0.0002787
395
14
2.868
0.05426
0.02817

"isw1, isw2"
151
8
4.287
0.05775
0.03345
211
9
3.452
0.05121
0.08591

kim4
119
7
4.76
0.05847
0.03657
199
10
4.066
0.06209
0.01083

mac1
64
5
6.322
0.06037
0.04695
82
5
4.934
0.05063
0.1721

yap1
55
6
8.828
0.0822
0.001889
80
7
7.081
0.07719
0.002277

yer030w
5
2
32.37
0.09883
0.01154
8
3
30.35
0.117
0.001103

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
cem1	89	6	5.455	0.05974	0.03844	134	6	3.623	0.0434	0.4186
cup5	267	14	4.243	0.07646	0.0002787	395	14	2.868	0.05426	0.02817
"isw1, isw2"	151	8	4.287	0.05775	0.03345	211	9	3.452	0.05121	0.08591
kim4	119	7	4.76	0.05847	0.03657	199	10	4.066	0.06209	0.01083
mac1	64	5	6.322	0.06037	0.04695	82	5	4.934	0.05063	0.1721
yap1	55	6	8.828	0.0822	0.001889	80	7	7.081	0.07719	0.002277
yer030w	5	2	32.37	0.09883	0.01154	8	3	30.35	0.117	0.001103