Analysis of genes having pattern RRPE in their upstream region

There is about 907 genes out of 6312 (14.37 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
 Testwise p-value
0.01
2.101e-05
0.05
0.000105

Experiment
 p=0.0250
 p=0.0500

#Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
 #Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
"arg5,6"
50
17
2.366
0.05395
0.1402
102
38
2.593
0.08898
2.266e-05
rpl12a
262
61
1.62
0.06218
0.03707
445
89
1.392
0.05636
0.2425
rpl27a (**4)
316
71
1.564
0.06319
0.03338
476
110
1.608
0.08311
0.0001437
rpl8a
175
53
2.108
0.08389
7.896e-05
293
82
1.948
0.09491
2.058e-06
she4
942
178
1.315
0.07056
0.01654
1172
234
1.389
0.09325
1.004e-05
yer050c
748
141
1.312
0.06208
0.1169
995
194
1.357
0.07979
0.001037
CMD1 (tet promoter)
376
72
1.333
0.04572
1.926
523
113
1.504
0.07469
0.002253
ymr014w
466
153
2.285
0.1589
0
646
192
2.068
0.1596
0
ymr269w
73
15
1.43
0.02427
18.29
149
41
1.915
0.06521
0.01321
yor078w
539
164
2.117
0.151
0
756
210
1.933
0.1537
0
CDC42 (tet promoter)
872
161
1.285
0.06297
0.1161
1146
213
1.293
0.0743
0.007299