Analysis of genes having pattern PDR in their upstream region

There is about 371 genes out of 6312 (5.88 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
 Testwise p-value
0.01
2.101e-05
0.05
0.000105

Experiment
 p=0.0250
 p=0.0500

#Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
 #Signif
 Signif.w. Pattern
 Ratio
 Corr
 p-value
aep2
271
31
1.946
0.05264
0.05499
409
45
1.872
0.06039
0.006941
cbp2
13
5
6.544
0.06344
0.04351
26
8
5.235
0.06881
0.009509
dot4
231
24
1.768
0.03982
0.835
337
38
1.918
0.05731
0.01669
isw1
55
16
4.949
0.0936
1.572e-05
81
18
3.781
0.08058
0.0001711
isw2
90
14
2.647
0.05099
0.1084
134
22
2.793
0.06778
0.00211
kim4
119
18
2.573
0.05622
0.03325
199
29
2.479
0.06885
0.001114
mrpl33
32
8
4.253
0.0589
0.04425
50
9
3.062
0.04717
0.2646
msu1
188
25
2.262
0.05741
0.02043
323
37
1.949
0.05782
0.01491
rml2 (**13)
538
53
1.676
0.05502
0.02691
753
67
1.514
0.05125
0.06857
she4
942
77
1.391
0.04531
0.2968
1172
101
1.466
0.06016
0.005346
ymr293c
348
37
1.809
0.05171
0.06515
495
49
1.684
0.05322
0.04325