Analysis of genes having pattern PAC in their upstream region

There is about 514 genes out of 6312 (8.14 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

"arg5,6"
50
16
3.93
0.07961
0.000385
102
31
3.732
0.1066
6.061e-08

rpl27a (**4)
316
45
1.749
0.05564
0.04015
476
67
1.729
0.06719
0.001684

rpl8a
175
40
2.807
0.09398
9.137e-07
293
57
2.389
0.09524
2.353e-07

she4
942
131
1.708
0.09468
5.234e-08
1172
176
1.844
0.1262
0

CMD1 (tet promoter)
376
48
1.568
0.04744
0.2873
523
73
1.714
0.06934
0.0008647

ymr014w
466
95
2.503
0.1309
3.553e-14
646
129
2.452
0.1509
0

ymr269w
73
7
1.178
0.008083
58.43
149
32
2.637
0.07877
0.0001157

yor078w
539
123
2.802
0.1684
0
756
154
2.502
0.1698
0

CDC42 (tet promoter)
872
101
1.422
0.05723
0.03163
1146
132
1.414
0.06555
0.002791

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
"arg5,6"	50	16	3.93	0.07961	0.000385	102	31	3.732	0.1066	6.061e-08
rpl27a (**4)	316	45	1.749	0.05564	0.04015	476	67	1.729	0.06719	0.001684
rpl8a	175	40	2.807	0.09398	9.137e-07	293	57	2.389	0.09524	2.353e-07
she4	942	131	1.708	0.09468	5.234e-08	1172	176	1.844	0.1262	0
CMD1 (tet promoter)	376	48	1.568	0.04744	0.2873	523	73	1.714	0.06934	0.0008647
ymr014w	466	95	2.503	0.1309	3.553e-14	646	129	2.452	0.1509	0
ymr269w	73	7	1.178	0.008083	58.43	149	32	2.637	0.07877	0.0001157
yor078w	539	123	2.802	0.1684	0	756	154	2.502	0.1698	0
CDC42 (tet promoter)	872	101	1.422	0.05723	0.03163	1146	132	1.414	0.06555	0.002791