Analysis of genes having pattern MIG1 in their upstream region

There is about 204 genes out of 6312 (3.23 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

isw1
55
8
4.501
0.06046
0.02877
81
8
3.056
0.04344
0.4537

sir4
126
13
3.192
0.0579
0.02356
189
16
2.619
0.05287
0.05175

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
isw1	55	8	4.501	0.06046	0.02877	81	8	3.056	0.04344	0.4537
sir4	126	13	3.192	0.0579	0.02356	189	16	2.619	0.05287	0.05175