Analysis of genes having pattern Leu3 in their upstream region

There is about 89 genes out of 6312 (1.41 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

ard1
28
3
7.599
0.05278
0.1954
55
6
7.737
0.07567
0.004293

bul1
35
5
10.13
0.08165
0.003498
61
6
6.976
0.07074
0.008171

clb2
164
7
3.027
0.03983
0.5915
243
11
3.21
0.05317
0.04684

fre6
4
3
53.19
0.1572
0.0001199
6
3
35.46
0.1272
0.0005849

gas1
248
9
2.574
0.03835
0.6741
335
14
2.964
0.05591
0.0201

gcn4
72
7
6.895
0.07588
0.002743
92
11
8.48
0.1089
2.477e-06

hda1
74
5
4.792
0.04955
0.1848
122
10
5.813
0.081
0.0004067

jnm1
12
1
5.91
0.0257
2.892
30
4
9.456
0.06999
0.02146

mac1
64
5
5.541
0.05511
0.08862
82
7
6.054
0.06951
0.006816

pex12
18
4
15.76
0.09447
0.001982
23
4
12.33
0.08206
0.006284

rml2 (**13)
538
19
2.505
0.05529
0.01482
753
24
2.26
0.05588
0.009049

rtg1
214
17
5.634
0.104
3.406e-07
292
23
5.586
0.121
5.074e-10

she4
942
26
1.957
0.04841
0.04994
1172
29
1.755
0.0436
0.1386

swi4
710
22
2.198
0.0514
0.02988
943
30
2.256
0.06337
0.0008257

ubr1
61
7
8.139
0.08447
0.0008335
107
12
7.954
0.1094
1.299e-06

vps8
62
7
8.007
0.0836
0.0009355
95
10
7.465
0.09574
3.565e-05

yel008w
53
5
6.691
0.06276
0.03312
75
7
6.619
0.07385
0.003651

yer050c
748
22
2.086
0.04804
0.06389
995
33
2.352
0.07035
8.289e-05

yhl029c
201
11
3.881
0.06274
0.007975
273
15
3.897
0.07393
0.00041

ymr031w-a
273
15
3.897
0.07393
0.0004087
389
18
3.282
0.07024
0.0005426

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
ard1	28	3	7.599	0.05278	0.1954	55	6	7.737	0.07567	0.004293
bul1	35	5	10.13	0.08165	0.003498	61	6	6.976	0.07074	0.008171
clb2	164	7	3.027	0.03983	0.5915	243	11	3.21	0.05317	0.04684
fre6	4	3	53.19	0.1572	0.0001199	6	3	35.46	0.1272	0.0005849
gas1	248	9	2.574	0.03835	0.6741	335	14	2.964	0.05591	0.0201
gcn4	72	7	6.895	0.07588	0.002743	92	11	8.48	0.1089	2.477e-06
hda1	74	5	4.792	0.04955	0.1848	122	10	5.813	0.081	0.0004067
jnm1	12	1	5.91	0.0257	2.892	30	4	9.456	0.06999	0.02146
mac1	64	5	5.541	0.05511	0.08862	82	7	6.054	0.06951	0.006816
pex12	18	4	15.76	0.09447	0.001982	23	4	12.33	0.08206	0.006284
rml2 (**13)	538	19	2.505	0.05529	0.01482	753	24	2.26	0.05588	0.009049
rtg1	214	17	5.634	0.104	3.406e-07	292	23	5.586	0.121	5.074e-10
she4	942	26	1.957	0.04841	0.04994	1172	29	1.755	0.0436	0.1386
swi4	710	22	2.198	0.0514	0.02988	943	30	2.256	0.06337	0.0008257
ubr1	61	7	8.139	0.08447	0.0008335	107	12	7.954	0.1094	1.299e-06
vps8	62	7	8.007	0.0836	0.0009355	95	10	7.465	0.09574	3.565e-05
yel008w	53	5	6.691	0.06276	0.03312	75	7	6.619	0.07385	0.003651
yer050c	748	22	2.086	0.04804	0.06389	995	33	2.352	0.07035	8.289e-05
yhl029c	201	11	3.881	0.06274	0.007975	273	15	3.897	0.07393	0.00041
ymr031w-a	273	15	3.897	0.07393	0.0004087	389	18	3.282	0.07024	0.0005426