Analysis of genes having pattern BAS1 in their upstream region

There is about 480 genes out of 6312 (7.60 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

hpt1
23
11
6.289
0.09269
0.0001002
30
15
6.575
0.1116
8.154e-07

jnm1
12
5
5.479
0.05679
0.1152
30
9
3.945
0.05958
0.04107

swi4
710
80
1.482
0.05494
0.04745
943
93
1.297
0.04232
1.047

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
hpt1	23	11	6.289	0.09269	0.0001002	30	15	6.575	0.1116	8.154e-07
jnm1	12	5	5.479	0.05679	0.1152	30	9	3.945	0.05958	0.04107
swi4	710	80	1.482	0.05494	0.04745	943	93	1.297	0.04232	1.047