Analysis of genes having pattern AFT1 in their upstream region

There is about 188 genes out of 6312 (2.98 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

cup5
267
26
3.269
0.08441
1.079e-05
395
29
2.465
0.06735
0.0007552

cyt1
33
4
4.07
0.03933
1.007
62
8
4.332
0.0586
0.03716

mac1
64
19
9.967
0.1594
3.658e-12
82
21
8.598
0.1532
3.453e-12

mrpl33
32
5
5.246
0.05343
0.137
50
7
4.7
0.05834
0.0462

rip1
21
4
6.395
0.05488
0.1425
31
7
7.581
0.08131
0.001636

vma8
205
29
4.75
0.1211
2.569e-10
282
32
3.81
0.1073
6.271e-09

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
cup5	267	26	3.269	0.08441	1.079e-05	395	29	2.465	0.06735	0.0007552
cyt1	33	4	4.07	0.03933	1.007	62	8	4.332	0.0586	0.03716
mac1	64	19	9.967	0.1594	3.658e-12	82	21	8.598	0.1532	3.453e-12
mrpl33	32	5	5.246	0.05343	0.137	50	7	4.7	0.05834	0.0462
rip1	21	4	6.395	0.05488	0.1425	31	7	7.581	0.08131	0.001636
vma8	205	29	4.75	0.1211	2.569e-10	282	32	3.81	0.1073	6.271e-09