Analysis of genes having pattern ABF1 in their upstream region

There is about 511 genes out of 6312 (8.10 percent) having the given pattern in their 300bp upstream region. Gene expression is deemed significantly altered if it has a p-value less than given acording to the gene specific error model of Hughes et Al. (Cell 2000)

The p-value column in the table is adjusted with Holm method to represent tablewise p-value.

The color coding is as follows:

Tablewise p-value
Testwise p-value

0.01
2.101e-05

0.05
0.000105

Experiment
p=0.0250
p=0.0500

#Signif
Signif.w. Pattern
Ratio
Corr
p-value
#Signif
Signif.w. Pattern
Ratio
Corr
p-value

ymr014w
466
59
1.564
0.05256
0.09338
646
80
1.53
0.05911
0.01792

yor078w
539
70
1.604
0.06036
0.01238
756
87
1.421
0.05266
0.1039

Experiment	p=0.0250					p=0.0500
	#Signif	Signif.w. Pattern	Ratio	Corr	p-value	#Signif	Signif.w. Pattern	Ratio	Corr	p-value
ymr014w	466	59	1.564	0.05256	0.09338	646	80	1.53	0.05911	0.01792
yor078w	539	70	1.604	0.06036	0.01238	756	87	1.421	0.05266	0.1039