Integrated Computational Methods for Genomic, Proteomic and Metabolic Modelling (ICOMIC)

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(-) Publications

• V. Mäkinen and E. Ukkonen: Local Similarity Based Point-Pattern Matching, In Proc. 13th Annual Symposium on Combinatorial Pattern Matching (CPM 2002), LNCS VOL. 2373, pp. 115-132, 2002.
• A. Rantanen, J. Rousu, J. T. Kokkonen, V. Tarkiainen, and R. Ketola: Computing Positional Isotopomer Distributions from Tandem  Mass Spectrometric Data, Metabolic Engineering 4 (2002), 285-294.
• J. Rousu, A. Rantanen and E. Ukkonen. Flux estimation from incomplete isotopomer data (pdf, 445kB).(ps.gz, 160kB) Report C-2002-55, Department of Computer Science, University of Helsinki
  
• J. Rousu, A. Rantanen, H. Maaheimo, E. Pitkänen, K. Saarela and E. Ukkonen.A method for estimating metabolic fluxes from incomplete isotopomer information International Workshop on Computational methods in Systems Biology,  Rovereto, Italy, February 2003, in press.
• J. Rousu, A. Rantanen. Improved Computation of 13C-Isotopomer Distributions from Tandem-MS Data.(ps.gz) Report C-2003-9, Department of Computer Science, University of Helsinki, 2003 .
  

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